Publications

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Jalkanen, J., Zhong, J., Nono Nankam, P. A., Bhalla, N., Elmastas, M., Luo, J., Weinbrenner, S., Frendo-Cumbo, S., Pesti, B., Gourash, W., Courcoulas, A., Yang Loureiro, Z., Dietrich, A., Bäckdahl, J., Thorell, A., Buggert, M., Kalucka, J., Emont, M. P., Rosen, E. D. ... Mejhert, N. (2026). Cytoarchitectural multi-depot profiling reveals immune-metabolic crosstalk in human colon-associated adipose tissue. Cell Metabolism, 38(2), 419-433.e9. https://doi.org/10.1016/j.cmet.2025.12.008

AlZaim, I., Hassan, M. N., Schröter, M., Mannino, L., Dragicevic, K., Sjogaard, M. B., Festa, J., Dokshokova, L., Weinbrenner, S., Tardajos Ayllon, B., Hansen, B., Rasmussen, R. K., Christensen, J. N., Wagman, O., Schipper, R., Cai, M., Dheedene, W., Bohn, A. B., Farup, J. ... Kalucka, J. (2026). Defining the vascular niche of human adipose tissue across metabolic states. Nature Metabolism. Advance online publication. https://doi.org/10.1038/s42255-026-01475-2

McCarthy, C. G., Aalkjær, C., Bagher, P., Beyer, A. M., Boedtkjer, E., Bomfim, G. F., Breslin, J. W., Briones, A. M., Castorena-Gonzalez, J. A., Costa, T. J., Dai, Z., Davel, A. P., Earley, S., Freed, J. K., Garland, C., Isakson, B. E., Jepps, T. A., Kalucka, J., Lavanderos, B. ... Wenceslau, C. F. (2026). Guidelines for Evaluating Endothelial Function in Vascular Tissue. American journal of physiology. Heart and circulatory physiology. Advance online publication. https://doi.org/10.1152/ajpheart.00656.2025

Damsgaard, C., Viuf Skøtt, M., Williams, C., Malte, H., Kidmose, C. K., Busk, M., Dedek, K., Konradsen, A. H., Rasmussen, A. S. S., Thomsen, J. S., Mikkelsen, A. V. G. T., Johannsen, K. S., Vendelbo, M., Revsbech, N. P., Elemans, C. P. H., Mouritsen, H., Kalucka, J. M., Lin, L., Iversen, N. K. ... Nyengaard, J. R. (2026). Oxygen-free metabolism in the bird inner retina supported by the pecten. Nature, 650(8102), 657–663. https://doi.org/10.1038/s41586-025-09978-w

Loft, A., Rydbirk, R., Klinggaard, E. G., Van Hauwaert, E. L., Wernberg, C. W., Møller, A. F., Dam, T. V., Hassan, M. N., Maniyadath, B., Nielsen, R., Krag, A., Kalucka, J., Schmidt, S. F., Lauridsen, M. E. M., Madsen, J. G. S. & Mandrup, S. (2026). Single-cell-resolved transcriptional dynamics of human subcutaneous adipose tissue during lifestyle- and bariatric surgery-induced weight loss. Nature Metabolism, 8, 260–278. https://doi.org/10.1038/s42255-025-01433-4

AlZaim, I., Hassan, M. N., Schröter, M., Mannino, L., Dragicevic, K., Sjogaard, M. B., Festa, J., Dokshokova, L., Weinbrenner, S., Tardajos Ayllon, B., Hansen, B., Rasmussen, R. K., Christensen, J. N., Wagman, O., Schipper, R., Cai, M., Dheedene, W., Bohn, A. B., Farup, J. ... Kalucka, J. (2025). Defining the vascular niche of human adipose tissue across metabolic states. bioRxiv. https://doi.org/10.1101/2024.09.22.610444

Liu, C. & Kalucka, J. (2025). Endothelial IGF-1 signalling: A conductor of vascular barrier function and low-density lipoprotein trafficking in atherogenesis. Cardiovascular Research, 121(7), 983-984. https://doi.org/10.1093/cvr/cvaf082

Hasan, S. S., John, D., Rudnicki, M., AlZaim, I., Eberhard, D., Moll, I., Taylor, J., Klein, C., von Heesen, M., Conradi, L. C., Adams, R. H., Lammert, E., Kalucka, J., Ruhrberg, C., Dimmeler, S. & Fischer, A. (2025). Obesity drives depot-specific vascular remodeling in male white adipose tissue. Nature Communications, 16(1), Article 5392. https://doi.org/10.1038/s41467-025-60910-2

Hansen, L. M. B., Dam, V. S., Guldbrandsen, H. Ø., Staehr, C., Pedersen, T. M., Kalucka, J. M., Beck, H. C., Postnov, D., Lin, L. & Matchkov, V. (2025). Spatial Transcriptomics and Proteomics Profiling After Ischemic Stroke Reperfusion: Insights Into Vascular Alterations. Stroke, 56(4), 1036-1047. https://doi.org/10.1161/STROKEAHA.124.048085

Loft, A., Emont, M. P., Weinstock, A., Divoux, A., Ghosh, A., Wagner, A., Hertzel, A. V., Maniyadath, B., Deplancke, B., Liu, B., Scheele, C., Lumeng, C., Ding, C., Ma, C., Wolfrum, C., Strieder-Barboza, C., Li, C., Truong, D. D., Bernlohr, D. A. ... Rosen, E. D. (2025). Towards a consensus atlas of human and mouse adipose tissue at single-cell resolution. Nature Metabolism, 7(5), 875-894. https://doi.org/10.1038/s42255-025-01296-9

Jovasevic, V., Wood, E. M., Cicvaric, A., Zhang, H., Petrovic, Z., Carboncino, A., Parker, K. K., Bassett, T. E., Moltesen, M., Yamawaki, N., Login, H., Kalucka, J., Sananbenesi, F., Zhang, X., Fischer, A. & Radulovic, J. (2024). Formation of memory assemblies through the DNA-sensing TLR9 pathway. Nature, 628(8006), 145-153. https://doi.org/10.1038/s41586-024-07220-7

Fan, S., Fleischer, J. R., Dokshokova, L., Böhme, L. S., Haas, G., Schmitt, A. M., Gätje, F. B., Emmalie Rosen, L. A., Bohnenberger, H., Ghadimi, M., Cui, B., Xu, X., Kalucka, J. M., Bösch, F., De Oliveira, T. & Conradi, L. C. (2024). High CIB1 expression in colorectal cancer liver metastases correlates with worse survival and the replacement histopathological growth pattern. Molecular Therapy: Oncology, 32(3), Article 200828. https://doi.org/10.1016/j.omton.2024.200828

Kurmasheva, N., Said, A., Wong, B., Kinderman, P., Han, X., Rahimic, A. H. F., Kress, A., Carter-Timofte, M. E., Holm, E., van der Horst, D., Kollmann, C. F., Liu, Z., Wang, C., Hoang, H.-D., Kovalenko, E., Chrysopoulou, M., Twayana, K. S., Ottosen, R. N., Svenningsen, E. B. ... Olagnier, D. (2024). Octyl itaconate enhances VSVΔ51 oncolytic virotherapy by multitarget inhibition of antiviral and inflammatory pathways. Nature Communications, 15(1), Article 4096. https://doi.org/10.1038/s41467-024-48422-x

Wälchli, T., Ghobrial, M., Schwab, M., Takada, S., Zhong, H., Suntharalingham, S., Vetiska, S., Gonzalez, D. R., Wu, R., Rehrauer, H., Dinesh, A., Yu, K., Chen, E. L. Y., Bisschop, J., Farnhammer, F., Mansur, A., Kalucka, J., Tirosh, I., Regli, L. ... Radovanovic, I. (2024). Single-cell atlas of the human brain vasculature across development, adulthood and disease. Nature, 632(8025), 603-613. https://doi.org/10.1038/s41586-024-07493-y

de Zeeuw, P., Treps, L., García-Caballero, M., Harjes, U., Kalucka, J., De Legher, C., Brepoels, K., Peeters, K., Vinckier, S., Souffreau, J., Bouché, A., Taverna, F., Dehairs, J., Talebi, A., Ghesquière, B., Swinnen, J., Schoonjans, L., Eelen, G., Dewerchin, M. & Carmeliet, P. (2024). The gluconeogenesis enzyme PCK2 has a non-enzymatic role in proteostasis in endothelial cells. Communications Biology, 7(1), Article 618. https://doi.org/10.1038/s42003-024-06186-6

Carlantoni, C., Liekfeld, L. M. H., Hemkemeyer, S. A., Schreier, D., Saygi, C., Kurelic, R., Cardarelli, S., Kalucka, J., Schulte, C., Beerens, M., Mailer, R. K., Schäffer, T. E., Naro, F., Pellegrini, M., Nikolaev, V. O., Renné, T. & Frye, M. (2024). The phosphodiesterase 2A controls lymphatic junctional maturation via cGMP-dependent notch signaling. Developmental Cell, 59(3), 308-325. https://doi.org/10.1016/j.devcel.2023.12.002

Festa, J., AlZaim, I. & Kalucka, J. (2023). Adipose tissue endothelial cells: insights into their heterogeneity and functional diversity. Current Opinion in Genetics and Development, 81, Article 102055. https://doi.org/10.1016/j.gde.2023.102055

AlZaim, I., Festa, J. & Kalucka, J. (2023). Adipose tissue lymphatic endothelial cells: revisited functions in the modulation of adipose biology. Current Opinion in Physiology, 34, Article 100675. https://doi.org/10.1016/j.cophys.2023.100675

Kurmasheva, N., Said, A., Wong, B., Kress, A., Liu, Z., Wang, C., Carter-Timofte, M. E., Holm, E., van der Horst, D., Hoang, H.-D., Twayana, K. S., Ottosen, R., Svenningsen, E. B., Begnini, F., Kiib, A. E., Weiss, H., Di Carlo, D., Muscolini, M., Higgins, M. ... Olagnier, D. P. C. (2023). Itaconate enhances oncolytic virotherapy by multitarget inhibition of antiviral and inflammatory pathways. (1 ed.) Research Square 2023. https://doi.org/10.21203/rs.3.rs-3035315/v1

Fleischer, J. R., Schmitt, A. M., Haas, G., Xu, X., Zeisberg, E. M., Bohnenberger, H., Küffer, S., Teuwen, L. A., Karras, P. J., Beißbarth, T., Bleckmann, A., Planque, M., Fendt, S. M., Vermeulen, P., Ghadimi, M., Kalucka, J., De Oliveira, T. & Conradi, L. C. (2023). Molecular differences of angiogenic versus vessel co-opting colorectal cancer liver metastases at single-cell resolution. Molecular Cancer, 22(1), Article 17. https://doi.org/10.1186/s12943-023-01713-1

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Revised 11.09.2025

Joanna Maria Kalucka

Department of Biomedicine

Kalucka-lab

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